PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG397100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 177aa    MW: 19144 Da    PI: 9.7949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG397100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-05661031254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Pavir.7KG397100.1.p  66 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKIL 103
                          77788899********998.....8***************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.64254103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1164120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-564107No hitNo description
Gene3DG3DSA:4.10.280.108.7E-864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MMDRLLTDGL VSSTGFLLPS PDKFSTSLEG VGESSSIINK KKANGEHAFK KPMLQTPSPL  60
PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHETIEYI KILHDQVGAL SAPYLKNGHQ  120
VHVPQLKSSS PEKSKDSHGE ISLKGRGLCL VPISSTFAVA SEVPVDFWTP FGANFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.114380.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682565e-99BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976935.11e-92PREDICTED: transcription factor bHLH112-like
SwissprotQ94JL34e-50BH112_ARATH; Transcription factor bHLH112
TrEMBLK3Y7E81e-92K3Y7E8_SETIT; Uncharacterized protein
STRINGSi010139m4e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-51bHLH family protein